1. Hoque MN, Akter S, Mishu ID, Islam MR, Rahman MS, Akhter M. et al. (2021). Microbial co-infections in COVID-19: Associated microbiota and underlying mechanisms of pathogenesis. Microbial Pathogenesis, 4:104941 (https://doi.org/10.1016/j.micpath.2021.104941) (Impact Factor: 2.94).
  2. Hoque MN, Rahman MS, Ahmed R, Hossain MS, Islam MS, Islam T. et al. (2021). Diversity and genomic determinants of the microbiomes associated with COVID-19 and non-COVID respiratory diseases. Gene Reports. 7:101200, https://doi.org/10.1016/j.genrep.2021.101200.
  3. Rahman MS, Hoque MN, Islam MR, Islam I, Mishu ID, Rahaman MM, Sultana M, Hossain MA (2021). Mutational insights into the envelope protein of SARS-CoV-2. Gene Reports, 22:100997, https://doi.org/10.1016/j.genrep.2020.100997. (Equal contribution).
  4. Saha O, Rakhi NN, Hoque MN, Sultana M, Hossain MA (2021). Genome-wide genetic marker analysis and genotyping of Escherichia fergusonii strain OTSVEF-60. Brazilian Journal of Microbiology, pp.1-16, https://doi.org/10.1007/s42770-021-00441-2. (Impact Factor: 2.48).
  5. Faisal GM, Hoque MN, Rahman MS, Islam T (2021). Challenges in medical waste management amid COVID-19 pandemic in a megacity Dhaka. Journal of Advanced Biotechnology and Experimental Therapeutics, 4(1): 106-113, eISSN: 2616-4760, https://doi.org/10.5455/jabet.2021.d111. (Equal contribution).
  6. Hoque MN, Sultana M, Hossain MA (2021). Dynamic Changes in Microbiome Composition and Genomic Functional Potentials in Bovine Mastitis. Journal of Data Mining in Genomics & Proteomics, 12(1):1000232.
  7. Hoque MN, Istiaq A, Rahman MS, Islam MR, Anwar A, Siddiki AMAMZ. et al. (2020). Microbiome dynamics and genomic determinants of bovine mastitis. Genomics 112(6):5188-5203. (Impact Factor: 6.205, 2020).
  8. Hoque MN, Istiaq A, Clement RA, Gibson KM, Saha O, Islam OK. et al. (2020). Insights Into the Resistome of Bovine Clinical Mastitis Microbiome, a Key Factor in Disease Complication. Frontiers in Microbiology, 11:860 (Impact Factor: 4.235).
  9. Saha O, Hoque MN, Islam OK, Rahaman M, Sultana M, Hossain MA. (2020). Multidrug-resistant avian pathogenic Escherichia coli strains and association of their virulence genes in Bangladesh. Microorganisms, 8(8):1135 (Equal contribution), (Impact Factor: 4.167).
  10. Rahman MS, Islam MR, Hoque MN, Alam ASMRU, Akhter M, Puspo JA. et al. (2020). Comprehensive annotations of the mutational spectra of SARS‐CoV‐2 spike protein: a fast and accurate pipeline. Transboundary and Emerging Diseases, 00:1–14, PMID: 32954666. (Equal contribution), (Impact Factor: 4.278).
  11. Islam MR, Hoque MN, Rahman MS, Alam AR, Akther M, Puspo JA. et al. (2020). Genome-wide analysis of SARS-CoV-2 virus strains circulating worldwide implicates heterogeneity. Scientific Reports, 10(1):1-9. (Equal contribution). (Impact Factor: 3.998).
  12. Hoque MN, Chaudhury A, Akanda MA, Hossain MA, Islam MT. (2020). Genomic diversity and evolution, diagnosis, prevention, and therapeutics of the pandemic COVID-19 disease. PeerJ, 1(8): e9689. (Impact Factor: 2.38).
  13. Rahman MS, Hoque MN, Islam MR, Akter S, Rubayet-Ul-Alam AS. et al. (2020). Epitope-based chimeric peptide vaccine design against S, M and E proteins of SARS-CoV-2 etiologic agent of global pandemic COVID-19: an in silico PeerJ, 8:e9572 (Equal contribution), (Impact Factor: 2.38).
  14. Rahman MS, Islam MR, Alam ASMRU, Islam I, Hoque MN, Akter S. et al. (2020) Evolutionary dynamics of SARS‐CoV‐2 nucleocapsid (N) protein and its consequences. Journal of Medical Virology, 1-19, (DOI: 10.1002/jmv.26626). (Impact Factor: 2.021).
  15. Al Amin, Hoque MN, Siddiki AZAMAM, Saha S, Kamal MM (2020). Antimicrobial resistance situation in animal health of Bangladesh. Veterinary World, 13(12), 2713. (Impact Factor: 1.54).
  16. Dutta S, Khatun A, Gupta DR, Surovy MZ, Rahman MM, Mahmud NU, Emes RD, Warry A, West HM, Clarke ML, Hoque MN. (2020). Whole-Genome Sequence of a Plant Growth-Promoting Strain, Serratia marcescens BTL07, Isolated from the Rhizoplane of Capsicum annuum Microbiology Resource Announcements, 30: 9(18). (Impact Factor: 0.89).
  17. Talukder AK, Rahman MA, Hoque MN, Islam MT, Rahman AN, Das ZC. (2020). Conceptus-related measurements at early pregnancy in Black Bengal goat: an abattoir study. Journal of Animal Reproduction and Biotechnology, 35(2):177-82.
  18. Hoque MN, Istiaq A, Clement RA, Sultana M, Crandall KA, Siddiki AZ, Hossain MA. (2019). Metagenomic deep sequencing reveals association of microbiome signature with functional biases in bovine mastitis. Scientific Reports, 9:13536. (Impact Factor: 4.12).
  19. Alam MS, Hoque MN. (2018). Prophylactic effects of vitamin E and selenium on di (n-butyl) phthalate-induced testicular damage in prepubertal rats. Journal of Advanced Biotechnology and Experimental Therapeutics, 1(3):65-71.
  20. Hoque MN, Das ZC, Rahman ANMA, Haider MG, Islam MA. (2018). Molecular characterization of Staphylococcus aureus strains in bovine mastitis milk in Bangladesh. International Journal of Veterinary Science and Medicine, 6 (1):53-60 (doi.org/10.1016/j.ijvsm.2018.03.008).
  21. Rahman ANMA, Hoque MN, Talukder AK, Das ZC. (2016). A survey of Japanese quail (Coturnixcoturnix japonica) farming in selected areas of Bangladesh. Veterinary World, 9(9): 940-947. (Impact Factor: 1.54).
  22. Hoque MN, Das ZC, Rahman ANMA, Hoque MM. (2016). Effect of administration of vitamin E, selenium and antimicrobial therapy on incidence of mastitis, productive and reproductive performances in dairy cows. International Journal of Veterinary Science and Medicine, 4:63-70 (doi:10.1016/j.ijvsm.2016.11.001).
  23. Hoque MN, Das ZC, Talukder AK, Alam MS, Rahman ANMA. (2015). Different screening tests and milk somatic cell count for the prevalence of subclinical bovine mastitis in Bangladesh. Tropical Animal Health and Production,47:79-86. (Impact Factor: 1.170).
  24. Hoque MN, Talukder AK, Akter M, Shamsuddin M. (2014). Evaluation of ovsynch protocols for timed artificial insemination in water buffaloes in Bangladesh. Turkish Journal of Veterinary and Animal Sciences, 38:418-424. (Impact Factor: 0.558).
  25. Akhter M, Hoque MN, Shamsuddin M, Alam MGS, Bari FY. (2013). Ultrasonography used for the management of reproductive disorders in dairy cows. IOSR Journal of Agriculture and Veterinary Science, 5(5): 61-66.
  26. Hoque MN, Talukder AK, Kamal MM, Jha AK, Bari FY, Shamsuddin M. (2011). Ovulation Synchronization in Water Buffaloes Guided by Milk Progesterone Assay. Journal of Embryo Transfer, 26(2):105-109.
  27. Jha AK, Hoque MN, Kamal MM, Rahman MM, Bhuiyan MMU, Shamsuddin M. (2010). Prevalence of mastitis and efficacy of different treatment regimens on clinical mastitis in cows. SAARC Journal of Agriculture, 8(1):79-89.